PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919877.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LSD
Protein Properties Length: 143aa    MW: 15052.7 Da    PI: 6.9974
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919877.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.97.9e-142751125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP+GA+sV+Ca+C++V
  XP_010919877.1 27 CSGCRNLLLYPLGATSVCCAVCNAV 51
                    ************************9 PP

2zf-LSD129.71e-096690125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+ lL+   GA sV+C++C+t+
  XP_010919877.1 66 CGGCHMLLMHMHGAYSVQCSCCHTI 90
                    ***********************97 PP

3zf-LSD141.71.8e-13104128125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     C +C+ lL+YP GA+sV+Ca+C++V
  XP_010919877.1 104 CANCHMLLMYPDGARSVKCAVCNFV 128
                     9**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.105.1E-522126No hitNo description
TIGRFAMsTIGR010535.5E-132454IPR005735Zinc finger, LSD1-type
PfamPF069435.1E-112751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.4E-106492IPR005735Zinc finger, LSD1-type
PfamPF069438.2E-96690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.8E-11101130IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-12104128IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MPVPLIPYAA PPVPFTPPNG SQSQIVCSGC RNLLLYPLGA TSVCCAVCNA VTVVPSPGTE  60
MARLVCGGCH MLLMHMHGAY SVQCSCCHTI NLALEANQVA HVNCANCHML LMYPDGARSV  120
KCAVCNFVTS IVDSPSSEQK LDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919877.11e-100PREDICTED: protein LSD1-like isoform X1
SwissprotQ0J7V95e-70LSD1_ORYSJ; Protein LSD1
TrEMBLW1PNK26e-80W1PNK2_AMBTC; Uncharacterized protein
STRINGVIT_02s0012g00990.t019e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-54lsd one like 1